FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11113979
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG72950.011.719974594-95
CGTATGC92100.010.54661794-95
TCGTATG104600.010.330687594-95
CTCGTAT117050.010.28693694-95
GTATGCC99200.09.57630294-95
ATGCCGT75300.09.30414794-95
TCTCGTA131000.09.15523694-95
ATCTCGT151450.08.29537394-95
AATCTCG162050.08.19242194-95
TGCCGTC80750.07.558577594-95
CCGTCTT66700.07.334843694-95
GCCGTCT72850.07.10683894-95
CTGAATC257900.07.044652594-95
CGAATCT334100.07.044443694-95
TGAATCT243050.06.96696194-95
ACGAATC355850.06.93422794-95
GAATCTC212700.06.81101594-95
AATCTGA335350.06.68533594-95
CACGAAT385850.06.475103494-95
GAATCTG369500.06.18315594-95
Produced by FastQC (version 0.11.5)