FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11113979
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA62950.011.37571894-95
CCGTATC75700.011.19981194-95
GCCGTAT83500.011.04275994-95
CGCCGTA92600.010.11274694-95
TCGCCGT113000.09.53756294-95
GTCGCCG133350.09.32132694-95
TGGTCGC156900.08.53281294-95
GGTCGCC150350.08.4903894-95
GTATCAT75850.08.36745994-95
GTGGTCG179200.07.92537994-95
TCGGTGG250200.07.66740894-95
CGGTGGT234600.07.64640394-95
TCTCGGT282650.07.015920694-95
ATCTCGG315800.06.9468394-95
GATCTCG335150.06.8387494-95
CTCGGTG285150.06.568053794-95
TAGATCT381950.06.502428594-95
ATCATTA83050.06.488528794-95
AGATCTC386950.06.25129394-95
TATCATT90800.06.224858394-95
Produced by FastQC (version 0.11.5)