FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969860

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969860
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11087490
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG71600.011.60837594-95
TCGTATG101900.010.99978494-95
CGTATGC91550.010.34977694-95
CTCGTAT113650.010.32223894-95
ATGCCGT76300.09.39937194-95
GTATGCC95600.09.14126694-95
TCTCGTA129050.08.86962894-95
AATCTCG159150.08.2813894-95
ATCTCGT146450.08.15633494-95
TGCCGTC79500.07.55735594-95
GAATCTC214150.07.42973294-95
CCGTCTT68100.07.427606694-95
GCCGTCT74400.07.213597394-95
TGAATCT241200.06.980480794-95
CTGAATC257050.06.94730994-95
CGAATCT328350.06.747781394-95
AATCTGA335000.06.351548794-95
TCACGAA408000.06.315183694-95
ACGAATC345900.06.27501892-93
CACGAAT375700.06.226032794-95
Produced by FastQC (version 0.11.5)