FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10934003
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG75150.011.37635894-95
CTCGTAT119400.010.40224694-95
TCGTATG105800.010.01103494-95
CGTATGC94350.09.48919194-95
ATGCCGT79150.09.42124894-95
TCTCGTA135050.09.249557594-95
GTATGCC100600.08.66358994-95
ATCTCGT155550.08.61070894-95
AATCTCG165900.08.28823394-95
GCCGTCT76800.07.946971494-95
TGCCGTC85050.07.76247694-95
CCGTCTT69550.07.068104794-95
GAATCTC218700.06.841030694-95
CTGAATC261750.06.813794-95
TGAATCT241650.06.81045694-95
CGAATCT333650.06.783151694-95
ACGAATC352950.06.45260694-95
TCTGAAT298000.06.311588394-95
CACGAAT381050.06.169968694-95
AATCTGA336400.06.049988794-95
Produced by FastQC (version 0.11.5)