FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10934003
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA66000.011.04690194-95
CCGTATC77700.010.78945994-95
GCCGTAT83400.010.1374894-95
GTCGCCG135400.09.6469594-95
TCGCCGT113600.09.59578194-95
CGCCGTA92900.09.53540594-95
GGTCGCC153750.08.72728894-95
GTATCAT76700.08.66979194-95
TGGTCGC161950.08.5493694-95
GTGGTCG185000.07.817926494-95
TCGGTGG254200.07.446098394-95
CGGTGGT234750.07.314399794-95
ATCATTA82300.06.896743394-95
CTCGGTG285650.06.85076494-95
TATCATT92600.06.822077894-95
TCTCGGT282150.06.809488394-95
GATCTCG333400.06.5676794-95
ATCTCGG313950.06.361821794-95
GGTGGTC262250.06.167052394-95
TAGATCT380400.06.09333894-95
Produced by FastQC (version 0.11.5)