FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11099903
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG76650.09.9755394-95
TCGTATG106700.09.88122594-95
CGTATGC96900.09.80231194-95
CTCGTAT118250.09.35786994-95
ATGCCGT81500.08.88657694-95
GCCGTCT79300.08.68394594-95
TCTCGTA133350.08.63656294-95
GTATGCC103450.08.3553294-95
TGCCGTC88950.08.32915494-95
AATCTCG163850.08.2462894-95
ATCTCGT151650.08.09543894-95
CCGTCTT72550.07.822628594-95
CGAATCT335650.07.053436394-95
GAATCTC215200.06.973760694-95
CTGAATC258850.06.8619294-95
ACGAATC355950.06.777927494-95
TGAATCT238950.06.658248494-95
CACGAAT387350.06.42465794-95
AATCTGA339600.06.30012794-95
TCTGAAT294150.06.29677294-95
Produced by FastQC (version 0.11.5)