FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11099903
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA69400.010.50394194-95
CGCCGTA98050.09.7837994-95
GCCGTAT87200.09.74854694-95
CCGTATC80600.09.63354294-95
TCGCCGT115550.09.08292494-95
GTATCAT79950.08.76146894-95
TGGTCGC162200.08.11021294-95
GTCGCCG137650.08.10764994-95
GTGGTCG184500.08.0308594-95
GGTCGCC154200.07.745632694-95
TATCATT96500.07.40649194-95
TCGGTGG251950.07.341696794-95
TCTCGGT287150.07.136335494-95
CGGTGGT233700.07.041218894-95
CTCGGTG287100.06.906000694-95
ATCATTA88500.06.814966794-95
ATCTCGG319300.06.744995694-95
GATCTCG339750.06.54867594-95
TAGATCT387150.06.335696794-95
AGATCTC393650.06.18282494-95
Produced by FastQC (version 0.11.5)