FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11060657
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC99350.010.61304394-95
TATGCCG77500.010.111999594-95
TCGTATG109700.09.65501794-95
GTATGCC106300.09.31595994-95
CTCGTAT122050.09.125566594-95
ATGCCGT81200.08.71535494-95
TCTCGTA137150.08.51910894-95
GCCGTCT77400.08.31482594-95
AATCTCG167250.08.27803494-95
ATCTCGT153450.08.14036194-95
TGCCGTC86600.07.815409794-95
CCGTCTT75400.07.68498994-95
GAATCTC217350.07.06918694-95
CGAATCT335350.06.769932794-95
CTGAATC262300.06.75406794-95
TGAATCT244650.06.66862594-95
ACGAATC353450.06.517312594-95
CACGAAT386150.06.395906494-95
AATCTGA336850.06.352037494-95
AGTCACG483300.06.19125394-95
Produced by FastQC (version 0.11.5)