FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13726466
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT78350.09.69758294-95
CCGTATC73050.09.55607594-95
CGTATCA61050.09.37311394-95
CGCCGTA84850.09.09460794-95
TCGCCGT105400.08.267570594-95
GTCGCCG126700.08.2644694-95
GGTCGCC140450.07.72586194-95
TGGTCGC144400.07.51452494-95
GTGGTCG164650.06.89316494-95
GTATCAT83650.06.84074794-95
CGGTGGT213400.06.75377794-95
TCGGTGG225700.06.64871994-95
TCTCGGT246500.06.376663794-95
ATCTCGG278250.06.340245794-95
GATCTCG291000.06.31539494-95
TAGATCT335100.05.91649594-95
CTCGGTG261450.05.63969294-95
GTAGATC404150.05.52840194-95
AGATCTC347700.05.42210994-95
GAGTGTA441800.05.266872494-95
Produced by FastQC (version 0.11.5)