FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13245896
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG59650.09.59466494-95
TCGTATG78700.09.26374994-95
CTCGTAT87050.08.75708294-95
TCTCGTA99950.08.71979794-95
CGTATGC72800.08.57921494-95
ATCTCGT118450.08.11975994-95
ATGCCGT69350.07.73900594-95
AATCTCG126400.07.684212794-95
CTAAATC176650.07.21911294-95
GTATGCC85350.06.928177494-95
TGCCTAA239900.06.86993194-95
GCCTAAA216950.06.69907694-95
ATGCCTA262950.06.638000594-95
CCTAAAT203750.06.41044594-95
CCGTCTT65700.06.18093194-95
TGCCGTC77150.05.94079594-95
GCCGTCT69150.05.804636592-93
TAAATCT199450.05.738998494-95
ACATGCC324800.05.484357492-93
AAATCTC200700.05.170793594-95
Produced by FastQC (version 0.11.5)