FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23480913
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCAAAG457750.07.5369181
CCAAAGT394350.07.18200642
CCCAAAT190950.06.99556541
CCCTAAT72650.06.7462471
TCGTATG31050.06.57740694-95
CCCGAAT35700.06.46056841
CCCTAAA115800.06.4316271
CCCAAGT201300.06.42105251
AAAGTGC339900.06.40116174
CCCGAAA44200.06.30526641
CCCTAGT62650.06.13573551
CAAAGTG405000.06.12297773
CCAGAAA310950.06.0574971
CCCAAAA211050.06.05611321
CCATAAA133800.06.03324371
AAGTGCT379050.06.00155935
CTCGTAT34000.05.867027894-95
CCCAATT97400.05.82131051
CGTATGC28750.05.781998694-95
CCATAAT96150.05.74706651
Produced by FastQC (version 0.11.5)