FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23107855
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCTAAA105300.06.6396791
GGCTAAT124850.06.21791461
CCCAAAG406500.06.2036681
CCCAAAT180700.05.9505091
CGCCGTA25650.05.83298694-95
CCAAAGT338200.05.81393962
CCCAAAA195800.05.66399151
CCCTAAT66300.05.5999561
CGAGTAG48750.05.55283
CCCGAAA44500.05.4177311
CCCGAGT91950.05.3487941
CCCATAA86950.05.32364461
GCTAATT184550.05.09559542
CAAAGTG349500.05.0820193
Produced by FastQC (version 0.11.5)