FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13198374
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG60300.010.08206694-95
CTCGTAT88850.08.65993194-95
TCTCGTA103100.08.31525194-95
CGTATGC74600.08.18127894-95
ATGCCGT70250.08.11319394-95
TCGTATG82050.08.07518694-95
AATCTCG126100.07.834388794-95
ATCTCGT120750.07.827495694-95
GTATGCC90400.07.09287394-95
GCCGTCT67750.07.04552994-95
TGCCGTC76400.06.93167894-95
GCCTAAA217450.06.760177694-95
CTAAATC183350.06.55384994-95
TGCCTAA238350.06.546016794-95
CCTAAAT205950.06.365084694-95
CCGTCTT67050.06.19820894-95
ATGCCTA261850.06.194339394-95
TAAATCT200400.05.81849594-95
AAATCTC207250.05.66055894-95
ACATGCC324500.05.261881494-95
Produced by FastQC (version 0.11.5)