FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13537480
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT65200.09.69751494-95
CGCCGTA73100.09.27199594-95
CGTATCA55250.09.23318294-95
CCGTATC62350.08.9500194-95
TCGCCGT93050.08.23640594-95
TGGTCGC124350.07.78107694-95
GGTCGCC121450.07.572473594-95
GTCGCCG111150.07.49849194-95
GTGGTCG144350.07.217329594-95
TCTCGGT219600.06.936315594-95
ATCTCGG248100.06.757333894-95
TCGGTGG196300.06.67376894-95
GATCTCG259650.06.41062894-95
CGGTGGT187450.06.36279694-95
TAGATCT301450.06.268531394-95
CTCGGTG227800.06.19249594-95
GTATCAT77800.06.18757694-95
AGATCTC319300.05.715577694-95
GTAGATC360950.05.460807394-95
GGTGGTC231100.05.306083794-95
Produced by FastQC (version 0.11.5)