FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13564223
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC75050.09.87265294-95
TCGTATG81850.09.40061594-95
TATGCCG62200.09.27781794-95
CTCGTAT91550.08.45647194-95
AATCTCG130500.08.352894-95
ATCTCGT123000.07.916052394-95
GTATGCC88950.07.769211394-95
TCTCGTA105200.07.584963394-95
ATGCCGT68050.07.398397494-95
GCCGTCT69850.06.93575494-95
GCCTAAA217750.06.587318494-95
CGACATA8200.00466635266.4028721
TGCCTAA241150.06.322337694-95
CCGTCTT69200.06.28022194-95
CTAAATC185700.06.227977392-93
ATGCCTA264050.06.15176794-95
CCTAAAT208600.06.147653694-95
TGCCGTC80900.05.95905694-95
TAAATCT202350.05.90329894-95
AAATCTC210600.05.77353194-95
Produced by FastQC (version 0.11.5)