FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13564223
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT69100.010.00011894-95
CGCCGTA75100.09.92841494-95
CGTATCA52300.09.48931394-95
CCGTATC64400.09.25503494-95
TCGCCGT92550.08.46696494-95
GTGGTCG150800.07.904830594-95
TGGTCGC127450.07.899801794-95
GTCGCCG111600.07.021661894-95
GGTCGCC123250.06.646949394-95
TCTCGGT221750.06.51073794-95
GATCTCG263300.06.403208794-95
GTATCAT76850.06.241625394-95
TCGGTGG200550.06.22806794-95
CGGTGGT193750.06.226043794-95
ATCTCGG250600.06.05494294-95
CTCGGTG235050.05.950387594-95
TAGATCT296450.05.695012692-93
GTGTAGA369250.05.41479294-95
GGTGGTC238800.05.399526694-95
AGATCTC314650.05.358223494-95
Produced by FastQC (version 0.11.5)