FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14108363
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG55850.09.56725994-95
CTCGTAT63000.09.49922594-95
CGTATGC51250.09.40654994-95
TATGCCG41800.09.1469894-95
TCTCGTA76550.08.37619594-95
CGAGTTA179800.07.71349794-95
AGTTAGC170600.07.57265394-95
GAGTTAG194050.07.318392894-95
ATCTCGT89750.07.303025294-95
GTTAGCA163000.07.109849594-95
ACGAGTT203300.07.02045594-95
ATGCCGT55650.06.9985394-95
CACGAGT228050.06.602179594-95
TAGCATC144900.06.572194-95
GTCACGA254050.06.5154194-95
TTAGCAT159300.06.440152694-95
AGTCACG280300.06.3203994-95
TCACGAG254250.06.183369694-95
GTATGCC67150.06.0476392-93
CATCTCG117750.05.76810794-95
Produced by FastQC (version 0.11.5)