FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13858489
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT46000.010.04876294-95
CGCCGTA51000.09.53320794-95
CGTATCA36400.08.68531794-95
TCGCCGT64600.08.19356494-95
CCGTATC45600.08.035995594-95
GTCGCCG81050.07.860347394-95
TGGTCGC94750.07.330471594-95
GTGGTCG110200.07.17208694-95
GGTCGCC94300.07.00987994-95
TCTCGGT169700.06.94378794-95
ATCTCGG199050.06.738123494-95
GATCTCG206450.06.63581594-95
TCGGTGG152250.06.559819794-95
CGGTGGT146100.06.540874594-95
TAGATCT232400.06.111273394-95
GAGTGTA309850.06.060070594-95
AGTGTAG300450.06.00255294-95
CTCGGTG181950.05.831292694-95
GTAGATC291050.05.702677294-95
GTGTAGA295500.05.68974594-95
Produced by FastQC (version 0.11.5)