FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13745346
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG40050.09.19085494-95
CGTATGC50500.09.17001294-95
TCGTATG51800.08.89403294-95
CTCGTAT58550.08.51763694-95
TCTCGTA71050.08.3560894-95
ATCTCGT86100.07.778084394-95
CGAGTTA171300.07.694179594-95
ACGAGTT195250.07.261226794-95
AGTTAGC162650.07.2419394-95
GTCACGA245750.07.08332594-95
GAGTTAG185700.06.854560494-95
ATGCCGT51150.06.778505394-95
GTTAGCA156900.06.73540694-95
CACGAGT218800.06.71846594-95
GTATGCC67900.06.68021394-95
TCACGAG243500.06.553857394-95
CATCTCG111900.06.43041894-95
AGTCACG273300.06.404047594-95
TAGCATC139550.06.279473394-95
TTAGCAT153500.06.033689594-95
Produced by FastQC (version 0.11.5)