FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13496321
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT56850.09.48261494-95
CGTATGC48100.09.38082994-95
TCTCGTA66450.08.755959594-95
TCGTATG51200.08.62731594-95
TATGCCG38450.08.39992194-95
CGAGTTA173550.07.75873894-95
ATCTCGT81450.07.60995594-95
TAGCATC137600.07.593935594-95
AGTTAGC163200.07.42134594-95
ACGAGTT195450.07.338949794-95
GAGTTAG185050.06.994232794-95
ATGCCGT49400.06.97065794-95
GTTAGCA157900.06.87320892-93
GTCACGA240900.06.81198994-95
CATCTCG107650.06.79468594-95
GTATGCC65250.06.696840394-95
TTAGCAT153950.06.540618494-95
CACGAGT219400.06.28886394-95
AGTCACG268450.06.2632994-95
TCACGAG241500.06.20504494-95
Produced by FastQC (version 0.11.5)