FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13496321
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA34900.09.79910294-95
CGCCGTA46300.09.48942694-95
GCCGTAT43050.09.26798594-95
TGGTCGC86600.07.733576394-95
TCGCCGT61200.07.722374494-95
CCGTATC43100.07.71436194-95
GTCGCCG75450.07.365560594-95
GGTCGCC85350.07.34597894-95
GTGGTCG103150.07.29859494-95
TCGGTGG155700.06.97070694-95
CGGTGGT144050.06.842015394-95
GATCTCG195450.06.804583594-95
TCTCGGT164050.06.77514894-95
ATCTCGG188650.06.684776394-95
TAGATCT225950.06.49569194-95
CTCGGTG177200.06.15174394-95
GAGTGTA307450.06.056068494-95
AGTGTAG293200.05.937302694-95
GTGTAGA289850.05.874826494-95
AGATCTC252750.05.83511894-95
Produced by FastQC (version 0.11.5)