FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13558898
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA51500.010.41897694-95
GCCGTAT44050.09.97125194-95
CGTATCA36500.08.91151594-95
CCGTATC44900.08.19613694-95
TCGCCGT67600.08.11314394-95
TGGTCGC88300.07.555608794-95
GTCGCCG79900.07.10215592-93
TCTCGGT165500.07.086842594-95
GTGGTCG106700.06.986972394-95
ATCTCGG191300.06.66473994-95
GATCTCG201950.06.64245294-95
GGTCGCC91200.06.63848894-95
TCGGTGG154900.06.590841394-95
TAGATCT229300.06.32646394-95
CTCGGTG180600.06.231382494-95
CGGTGGT145700.06.09446994-95
AGATCTC254800.05.991497594-95
GTAGATC292950.05.940654894-95
TGTAGAT301950.05.936572694-95
AGTGTAG307700.05.8950894-95
Produced by FastQC (version 0.11.5)