FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23228224
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCAAAG451850.07.25513271
CCCAAGT201700.07.0027521
CCCAAAA207800.06.7971851
CCCTAAA108150.06.57419631
CCAAAGT387100.06.5685152
CCCAAAT185850.06.5472741
TCGTATG28700.06.289006794-95
CTCGTAT33250.06.285522594-95
CCCTAAT69000.06.01662641
CCCGAGT96400.05.94000961
AAAGTGC330800.05.86061674
GGCTAAT134000.05.7332911
CAAAGTG389000.05.70447833
CCCTATT70600.05.6775051
CCCAATT95850.05.67538931
CCCTAAC70800.05.66146661
CGTATGC29600.05.616382694-95
CCCATAA87250.05.5238121
CCATAAT94450.05.50690361
CCCAATA78900.05.5036061
Produced by FastQC (version 0.11.5)