FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13705079
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA35000.09.5660694-95
GCCGTAT43150.09.07998694-95
CGCCGTA46250.08.93345694-95
CCGTATC43400.08.91825694-95
TCGCCGT62600.08.19334994-95
TGGTCGC87550.07.756966694-95
GTGGTCG102000.07.123661594-95
GTCGCCG75250.07.03688494-95
TCTCGGT162700.06.903281794-95
GGTCGCC87800.06.815348694-95
ATCTCGG190200.06.80405894-95
GATCTCG196350.06.748159494-95
TCGGTGG151200.06.407526594-95
TAGATCT224250.06.37449994-95
CGGTGGT141750.06.34889594-95
AGTGTAG294600.06.077439394-95
CTCGGTG174200.05.95683294-95
GTAGATC286400.05.919802794-95
GTGTAGA284800.05.90303494-95
GAGTGTA307050.05.76914994-95
Produced by FastQC (version 0.11.5)