FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12660421
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG153750.010.73486494-95
CGTATGC198400.010.6889994-95
ATGCCGT148800.010.42166494-95
TCGTATG219400.010.13132194-95
GCCGTCT129500.09.95765194-95
CCGTCTT116100.09.90010994-95
TGCCGTC145850.09.769484594-95
CTCGTAT245000.09.67367194-95
GTATGCC193300.09.57045394-95
TCTCGTA269600.09.00239194-95
TATCTCG321800.08.75236694-95
CGTCTTC120800.08.74822594-95
ATCTCGT305350.08.3839394-95
ATATCTC383000.08.05447594-95
GATATCT414300.07.852943494-95
TGATATC452900.07.4825394-95
CGTGATA524150.07.280934394-95
GTGATAT496650.07.167670294-95
ACGTGAT578900.06.81795894-95
AACGTGA629000.06.565620494-95
Produced by FastQC (version 0.11.5)