FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12461931
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA131250.012.099174594-95
CCGTATC152500.011.16712294-95
GCCGTAT165850.010.65816594-95
CGCCGTA190500.010.61179894-95
GTATCAT136050.010.28148494-95
TCGCCGT221500.010.07821794-95
GTCGCCG256400.09.54716494-95
GGTCGCC286650.09.34181794-95
TGGTCGC312400.08.90915894-95
ATCATTA125950.08.50062594-95
GTGGTCG352600.08.23986494-95
TATCATT144350.08.213531594-95
TCATTAA128300.07.859536694-95
CGGTGGT437350.07.546778794-95
TCGGTGG467450.07.393884794-95
TCTCGGT542100.07.13566894-95
CTCGGTG521250.06.966179494-95
GGTGGTC447500.06.92065294-95
CATTAAA127150.06.819204394-95
ATCTCGG618950.06.779849594-95
Produced by FastQC (version 0.11.5)