FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004969931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004969931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12668393
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCA131500.011.89962494-95
CCGTATC151850.011.25877894-95
GCCGTAT170750.011.04163594-95
CGCCGTA191200.010.48161294-95
GTATCAT134900.010.08593794-95
TCGCCGT221250.09.3048594-95
TGGTCGC307900.09.16950194-95
GGTCGCC284250.08.88821894-95
GTCGCCG253400.08.64905594-95
ATCATTA130400.08.44916894-95
GTGGTCG349200.08.37741594-95
TATCATT146400.07.85014894-95
CGGTGGT437050.07.633413394-95
TCATTAA132400.07.604163694-95
TCGGTGG471400.07.26355594-95
GGTGGTC449150.07.205730494-95
CTCGGTG521650.06.846083694-95
CATTAAA130300.06.742653494-95
TCTCGGT537950.06.72251294-95
ATCTCGG610350.06.28689294-95
Produced by FastQC (version 0.11.5)