FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004970868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004970868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17732
Sequences flagged as poor quality0
Sequence length54-26989
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAAT9005.075569591698624No Hit
GCCATGACCATTGTTATTTGTCCAGAAGTCAAAATTGTAGGGAACTTGGC3842.165576359124746No Hit
CCTGAAGAAATGTCACGGCTTGTTGGCGCAGGCCGCCTGCTCTCAGGAAT3401.917437401308369No Hit
CTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATC1881.0602300924881571No Hit
GCCATGACCATTGTTATTTGTCAGAAGTCAAAATTGTAGGGAACTTGGCC1420.8008120911346718No Hit
CTGAAGAAATGTCACGGCTTGTTGGCGCAGGCCGCCTGCTCTCAGGAATC780.43988269794721413No Hit
GCCATGACCATTGTTGTCCAGAAGTCAAAATTGTAGGGAACTTGGCCACC740.417324610872998No Hit
GCCATGACCATTGTTATTTGTCCAGAAGTCAAAATTGTAGGAACTTGGCC620.34965034965034963No Hit
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAAGGAA600.3383713061132416No Hit
CCCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAA540.3045341755019174No Hit
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGAATC520.2932551319648094No Hit
GCCATGACCATTGTTATTTGTCCAGAAGTCAAAATTGTAGAACTTGGCCA500.28197608842770133No Hit
GCCATGACCATTATTTGTCCAGAAGTCAAAATTGTAGGGAACTTGGCCAC440.24813895781637718No Hit
CCTGAAGAAATGTCGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATCT400.22558087074216107No Hit
GCCATGACCATTATTATTTGTCCAGAAGTCAAAATTGTAGGGAACTTGGC360.20302278366794496No Hit
CCTGAAGAAATGTCACGGCTTATTGGCGCAGGCCGCCTGCTCTCAGGAAT360.20302278366794496No Hit
CCTGAAGAAATGTCACGGCTTGTTGGCGCAGGCCGCCTGCTCTCAAGGAA340.1917437401308369No Hit
GCCATGACCATTGTTATTTGTCCAGAAGTCAAAATTGTAGGGAACTTGTA340.1917437401308369No Hit
CCTGAAGAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATC340.1917437401308369No Hit
GCCATGACCATTGTTATTGTCCAGAAGTCAAAATTGTAGGGAACTTGGCC320.18046469659372885No Hit
CCTGAAGAAATGTACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATC300.1691856530566208No Hit
GCCATGACCATTGTTATTTGTCCAGAAGTCAAAATTGTGAGAACTTGGCC280.15790660951951274No Hit
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCCTCAGGAA280.15790660951951274No Hit
GCCATGACCATTGTTATTTGTCCAAGTCAAAATTGTAGGGAACTTGGCCA280.15790660951951274No Hit
CCCTGAAGAAATGTCACGGCTTGTTGGCGCAGGCCGCCTGCTCTCAGGAA260.1466275659824047No Hit
CTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAAGGAAT240.13534852244529663No Hit
CCTGAAGAAATGTCACGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATC240.13534852244529663No Hit
CCTGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATCTC220.12406947890818859No Hit
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCAGGAATCT220.12406947890818859No Hit
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGGAA220.12406947890818859No Hit
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCGCCTGCTCTCAGGAATC220.12406947890818859No Hit
GCCATGACCATTGTTATTTGTCAGAAGTCAAAATTGTAGGAACTTGGCCA200.11279043537108054No Hit
GCCATGACCATTGTTATTTGTCCAGAAGTCAAAATTGTAGGGGAACTTGG200.11279043537108054No Hit
CCTGAAGAAATGTCACGGCTTGTTGGCGCAGGCCGCCTGCTCTCAGAATC200.11279043537108054No Hit
GCCATGACCATTGTTGTCAGAAGTCAAAATTGTAGGGAACTTGGCCACCT200.11279043537108054No Hit
GCCATGACCATTGTTATTTGTCCAGAAGTCAAAATTGGCAGGGAACTTGG200.11279043537108054No Hit
CCTGAAGAAATGTCACGGCATTGGCGCAGGCCGCCTGCTCTCAGGAATCT180.10151139183397248No Hit
GCCATGACCATTATTTGTCAGAAGTCAAAATTGTAGGGAACTTGGCCACC180.10151139183397248No Hit
GCCATGACCATTGTTATTTGTCCAGAAGTCAAAATTGTAGAGACTTGGCC180.10151139183397248No Hit
CCTGAAGAAATGTCACGGCTTGTTAAGCGCAGGCCGCCTGCTCTCAGGAA180.10151139183397248No Hit
CCTGAAGGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAA180.10151139183397248No Hit
CCTGAAGAAATGTCACGGCTTGGTAGCGCAGGCCGCCTGCTCTCAGGAAT180.10151139183397248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)