FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004970916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004970916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8946
Sequences flagged as poor quality0
Sequence length84-35911
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAAT4474.99664654594232No Hit
CCTGAAGAAATGTCACGGCTTGTTGGCGCAGGCCGCCTGCTCTCAGGAAT1711.9114688128772637No Hit
GCCATGACCATTGTTATTTGTCCAGAGGTCAAAATTGTAGGGAACTTGGC1221.3637379834562933No Hit
CTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATC901.0060362173038229No Hit
CTGAAGAAATGTCACGGCTTGTTGGCGCAGGCCGCCTGCTCTCAGGAATC460.5141962888441762No Hit
GCCATGACCATTGTTATTTGTCAGAGGTCAAAATTGTAGGGAACTTGGCC420.4694835680751174No Hit
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAAGGAA400.44712720769058795No Hit
GCCATGACCATTGTTATTTGTCCAGAGGTCAAAATTGTAGGAACTTGGCC250.2794545048066175No Hit
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGAATC240.2682763246143528No Hit
CCTGAAGAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATC230.2570981444220881No Hit
GCCATGACCATTGTTGTCCAGAGGTCAAAATTGTAGGGAACTTGGCCACC220.24591996422982337No Hit
GCCATGACCATTGTTATTTGTCCAGAGGTCAAAATTGGCAGGGAACTTGG210.2347417840375587No Hit
CCTGAAGAAATGTCACGGCTTATTGGCGCAGGCCGCCTGCTCTCAGGAAT190.2123854236530293No Hit
GCCATGACCATTGTTATTTGTCCAGAGGTCAAAATTGTGAGAACTTGGCC180.2012072434607646No Hit
CCTGAAGAAATGTCACGGCTTGTTGGCGCAGGCCGCCTGCTCTCAGAATC170.1900290632684999No Hit
GCCATGACCATTATTTGTCCAGAGGTCAAAATTGTAGGGAACTTGGCCAC170.1900290632684999No Hit
GCCATGACCATTATTATTTGTCCAGAGGTCAAAATTGTAGGGAACTTGGC160.1788508830762352No Hit
GCCATGACCATTATTATTTGTCAGAGGTCAAAATTGTAGGGAACTTGGCC160.1788508830762352No Hit
CCTGAAGAAATGTCGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATCT160.1788508830762352No Hit
GCCATGACCATTGTTATTTGTCCAGAGGTCAAAATTGTAGAACTTGGCCA160.1788508830762352No Hit
CCCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAA150.1676727028839705No Hit
GCCATGACCATTGTTATTTGTCAGAGGTCAAAATTGTAGAACTTGGCCAC150.1676727028839705No Hit
GCCATGACCATTGTTATTTGTCAGAGGTCAAAATTGGCAGGGAACTTGGC140.1564945226917058No Hit
GCCATGACCATTGTTATTTGTCAGAGGTCAAAATTGTGAGAACTTGGCCA140.1564945226917058No Hit
CCTGAAGAAATGTCACGGCATTGGCGCAGGCCGCCTGCTCTCAGGAATCT130.1453163424994411No Hit
CCTGAAGAAATGTCACGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATC130.1453163424994411No Hit
GCCATGACCATTGTTATTTGTCCAGAGGTCAAATTGTAGGGAACTTGGCC120.1341381623071764No Hit
CCTGAAGAAATGTACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATC120.1341381623071764No Hit
CCTGAAGAAATGTCACGGCTTGTTGGCGCAGGCCGCCTGCTCTCAAGGAA110.12295998211491169No Hit
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCAGGAATCT110.12295998211491169No Hit
CCTGAAGAAATGTCACGGCTTGTTAAGCGCAGGCCGCCTGCTCTCAGGAA110.12295998211491169No Hit
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCGGAATC110.12295998211491169No Hit
CCTGAAGAAATGTCACGGCTTGGTAGCGCAGGCCGCCTGCTCTCAGGAAT110.12295998211491169No Hit
CCTGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATCTC100.11178180192264699No Hit
CCTGAAGAAATGTCACGGCTTGATAGCGCAGGCCGCCTGCTCTCAGGAAT100.11178180192264699No Hit
CCTGAAGAAATGTCACGGCTTGATGGCGCAGGCCGCCTGCTCTCAGGAAT100.11178180192264699No Hit
GCCATGACCATTATTATTTGTCCAGAGGTCAAAATTGTGAGAACTTGGCC90.1006036217303823No Hit
CCTGAAGAAATGTCACGGCTTGTGGCGCAGGCCGCCTGCTCTCAGGAATC90.1006036217303823No Hit
CCTGAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGGAATC90.1006036217303823No Hit
CCTGAAGAAATGTCACGGCTTGTTAGCGCAGGCCGCCTGCTCTCAGATCT90.1006036217303823No Hit
CCTGAAGAAATGTCACGGCATTAGCGCAGGCCGCCTGCTCTCAGGAATCT90.1006036217303823No Hit
GCCATGACCATTGTTATTTGTCCAGAGGTCAAAATTGGCAGAACTTGGCC90.1006036217303823No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)