Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004973540 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 464062798 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATG | 1344217 | 0.2896627365505821 | TruSeq Adapter, Index 7 (97% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCGGAA | 369275 | 0.0 | 68.74184 | 1 |
TCGGAAG | 381870 | 0.0 | 66.34645 | 2 |
CGGAAGA | 398930 | 0.0 | 63.40606 | 3 |
AGAGCAC | 654570 | 0.0 | 38.852005 | 7 |
AGCACAC | 678795 | 0.0 | 37.408848 | 9 |
GAGCACA | 695530 | 0.0 | 36.544197 | 8 |
GAAGAGC | 717250 | 0.0 | 35.67606 | 5 |
AAGAGCA | 969050 | 0.0 | 26.56749 | 6 |
GGAAGAG | 1083400 | 0.0 | 23.916544 | 4 |
TATGCCG | 239135 | 0.0 | 21.351875 | 45-49 |
CGTATGC | 252110 | 0.0 | 20.010855 | 45-49 |
CGGCTAT | 261140 | 0.0 | 19.58438 | 30-34 |
CTCGTAT | 221675 | 0.0 | 19.476276 | 40-44 |
ATGCCGT | 266455 | 0.0 | 19.107677 | 45-49 |
TCTCGTA | 225790 | 0.0 | 19.012154 | 40-44 |
TGCCGTC | 266210 | 0.0 | 18.81861 | 45-49 |
GCCGTCT | 269635 | 0.0 | 18.448719 | 50-54 |
ACCGGCT | 286795 | 0.0 | 17.896687 | 30-34 |
TCGTATG | 238690 | 0.0 | 17.815765 | 40-44 |
TCACCGG | 292095 | 0.0 | 17.361143 | 25-29 |