FastQCFastQC Report
Tue 19 Apr 2022
EGAF00004973602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004973602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477400013
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1862000.041.7030531
TCGGAAG2011400.038.577412
CGGAAGA2206650.035.1672743
AGAGCAC4886850.016.4844867
TATGCCG986050.016.29053545-49
AGCACAC5206850.015.4992329
GAGCACA5314950.015.2099078
GAAGAGC5490800.014.7549665
CGTATGC1117150.014.33727845-49
CTCGTAT1015250.013.90581340-44
TCTCGTA1067150.013.23902640-44
TTACTCG1220750.012.89804930-34
ATGCCGT1287650.012.57508845-49
TACTCGA1282550.012.55181735-39
TGCCGTC1304650.012.06230645-49
GCCGTCT1345000.011.86361450-54
TCGTATG1205600.011.51301540-44
ATCTCGT1314600.010.91797140-44
AAGAGCA8078750.010.3267866
ACTCGAT1630350.010.19161735-39
Produced by FastQC (version 0.11.5)