FastQCFastQC Report
Sat 25 May 2024
EGAF00004973810

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004973810
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81153222
Total Bases10.2 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGT1861640.22939816240444524No Hit
ATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGTCTT1002760.12356379393044924TruSeq Adapter, Index 11 (95% over 21bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT944590.11639587150341364No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)