FastQCFastQC Report
Sun 12 May 2024
EGAF00004973876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004973876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50480382
Total Bases6.3 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1220460.24176916886247016No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT619190.1226595313799329No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT523570.10371751941179842No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)