FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004976192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004976192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26885990
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2083612477.49807241615429No Hit
AAGGGAAAATGACAAAGAACAGCTCAAAGCAATTTCTACACGAGATCCTC1790190.6658449251822232No Hit
ACACAGGGAGGGGAACAGGAGGAAGCAAACCACCATGGCA328290.12210448638863586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)