FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004976257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004976257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17637994
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGGGG3982200.08.6729555140-144
TCAATCG32650.07.8094716140-144
AGGGGGG369550.07.737825140-144
AAGGGGG399550.07.311869140-144
AAAGGGG488850.06.4417834140-144
GCCGTCT1312250.06.2946663140-144
CGTCTTC1190550.06.2677794140-144
AAAAGGG536350.06.2258224140-144
CCGTCTT1263350.06.2099133140-144
CTTGAAA937000.06.115849140-144
CTGCTTG1029150.06.0637507140-144
GTCAATG184950.06.059779140-144
TGCCGTC1370050.06.056443140-144
TATGCCG1481950.05.9315777140-144
ATGCCGT1428650.05.9189386140-144
GTCTTCT1255100.05.8822994140-144
TCTGCTT1145750.05.779845140-144
TTCTGCT1180150.05.74076140-144
GTATGCC1596750.05.7045035140-144
CGTATGC1627650.05.6740913140-144
Produced by FastQC (version 0.11.5)