FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004976261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004976261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16991036
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGGGG2902850.07.7345166140-144
AGGGGGG278400.07.1927757140-144
AAGGGGG297600.07.062742140-144
CGTCTTC870400.06.7744465140-144
GCCGTCT962600.06.568568140-144
CCGTCTT931850.06.554972140-144
GTCAATG152350.06.4584637140-144
TGCCGTC1008800.06.433402140-144
CTTGAAA691300.06.381013140-144
TATGCCG1097650.06.362821140-144
ATGCCGT1055500.06.3166394140-144
GTCTTCT936250.06.313361140-144
CGTATGC1219150.06.2474556140-144
AAAGGGG368250.06.1889176140-144
GTATGCC1194350.06.143177140-144
TCGTATG1264600.06.124308140-144
CTGCTTG783250.06.0972514140-144
CTCGTAT1203050.06.0209165140-144
AAAAGGG401300.05.9915357140-144
TTCTGCT889900.05.937985140-144
Produced by FastQC (version 0.11.5)