FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004976305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004976305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18959408
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGGGG2813350.07.038264140-144
CGTCTTC812750.06.916317140-144
GCCGTCT911850.06.9056087140-144
CCGTCTT880100.06.847001140-144
AGGGGGG258350.06.83081140-144
TATGCCG1061050.06.802154140-144
TGCCGTC966350.06.7800136140-144
ATGCCGT1015550.06.6543965140-144
AAGGGGG293050.06.6266303140-144
CGTATGC1178450.06.4716845140-144
GTATGCC1163350.06.461573140-144
TCGTATG1212150.06.3369217140-144
ATGCCGG58800.06.296517140-144
GTCTTCT885150.06.2643447140-144
CTCGTAT1157850.06.1239815140-144
AAAGGGG359600.06.1213646140-144
CTTGAAA673900.06.1010294140-144
CTGCTTG762050.06.026698140-144
AAAAGGG400250.06.014364140-144
TTCTGCT848650.05.9209642140-144
Produced by FastQC (version 0.11.5)