FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004976307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004976307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16299227
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTTG53750.08.844322140-144
TCTCGTT60350.08.640927140-144
ATGCCGG93600.08.4186125140-144
GCCGTCT606000.07.366785140-144
CCGTCTT597100.07.3318357140-144
TATGCCG759450.07.162454140-144
CGTCTTC534700.07.147533140-144
CCGTCGT39800.07.0579834140-144
TGCCGTC658500.06.9282155140-144
CGTATGC846600.06.8760605140-144
TCGCGTT14150.06.8209906140-144
TCGTATG842200.06.756331140-144
ATGCCGT696650.06.720441140-144
GTATGCC845650.06.7049184140-144
CTCGTAT859150.06.602917140-144
AAGGGGG224200.06.515255140-144
GTCTTCT604400.06.4352937140-144
AGGGGGG213700.06.4106946140-144
GGGGGGG2223000.06.3532057140-144
CGTCGTC33850.06.2558703140-144
Produced by FastQC (version 0.11.5)