FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004976343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004976343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18682219
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGGGGG3017250.07.943808140-144
AGGGGGG300350.07.386386140-144
AAGGGGG325900.07.1874537140-144
CGTCTTC992300.06.7826395140-144
GCCGTCT1108700.06.7397084140-144
CCGTCTT1068600.06.725696140-144
TGCCGTC1165650.06.676138140-144
CTTGAAA778950.06.6559668140-144
TATGCCG1277500.06.637404140-144
ATGCCGT1229600.06.5632377140-144
CTGCTTG876700.06.557973140-144
GCAATCG33250.06.3255763140-144
GTATGCC1384600.06.263413140-144
GTCTTCT1059650.06.260458140-144
CGTATGC1412700.06.258137140-144
AAAGGGG398550.06.19898140-144
TCGTATG1462650.06.1123786140-144
TCTGCTT977450.06.1104565140-144
AAAAGGG440500.06.099185140-144
TTCTGCT1002100.06.053591140-144
Produced by FastQC (version 0.11.5)