FastQCFastQC Report
Thu 12 May 2022
EGAF00004976722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004976722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences359053140
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCCGAT11045372830.762501617448606No Hit
CCCTAACA8235421522.936497644889No Hit
GAAGGCTG7535849320.988116967867207No Hit
TGGATTGC7215102320.09480351571358No Hit
NTTCCGAT38775241.0799303969323315No Hit
NCCTAACA29013990.8080695241935496No Hit
NAAGGCTG26432810.7361810009515584No Hit
NGGATTGC25276160.7039671063731681No Hit
ATTCCTAT3728000.10382864218928707RNA PCR Primer, Index 27 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)