FastQCFastQC Report
Tue 28 Jun 2022
EGAF00004976731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004976731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences298554801
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCGAT9282871131.092687402471213No Hit
ACCCGACG8059287026.99433059862266No Hit
TGATATTC6262803420.977064776794528No Hit
GTGATCGA5635764118.876816186251848No Hit
NATGCGAT6871650.23016377485753445No Hit
NCCCGACG5961180.1996678660009222No Hit
NGATATTC4644530.15556708465056637No Hit
NTGATCGA4196400.14055710998263266No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)