FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004976769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004976769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63395
Sequences flagged as poor quality0
Sequence length251
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATTGGGACTCAGCCAGGGTTTTCCCAGTCACGACGAAACCACTTCTTT1130.1782474958592949No Hit
TTCATTCGACTCAGCCAGGGTTTTCCCAGTCACGACCCTGAATGCCCCAA840.13250256329363513No Hit
TGCATTCGACTCAGCCAGGGTTTTCCCAGTCACGACCCTGAATGCCCCAA760.11988327155138417No Hit
TCATTGGGAAGGAGCCAGGGTTTTCCCAGTCACGACGCTGAAAGGACTGG740.11672844861582143No Hit
TAATTGGGACTCAGCCAGGGTTTTCCCAGTCACGACGAAACCACTTCTTT740.11672844861582143No Hit
TTATTGGGACGAGGCCAGGGTTTTCCCAGTCACGACGATTAATTGCCACA730.11515103714804006No Hit
TGATTGGGACTCAGCCAGGGTTTTCCCAGTCACGACGAAACCACTTCTTT710.11199621421247732No Hit
TTCATTCGATAAGCCCAGGGTTTTCCCAGTCACGACGCATCAACGGTTTT690.10884139127691457No Hit
ATATTGGGACTCAGCCAGGGTTTTCCCAGTCACGACGAAACCACTTCTTT660.10410915687357046No Hit
TTATTGGGAAGGAGCCAGGGTTTTCCCAGTCACGACGCTGAAAGGACTGG650.1025317454057891No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)