FastQCFastQC Report
Thu 26 May 2022
EGAF00004977249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004977249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376804669
Sequences flagged as poor quality0
Sequence length74
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTTCTAAACCCT8657480.2297604226342535No Hit
GTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTACAGAAT8278000.2196894221605306No Hit
GCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTT8212640.21795483643542646No Hit
GGAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTACA7940640.2107362422305866No Hit
GTGGAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTA7310140.19400343470797068No Hit
GCACCGTGGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTTCTAAACCCTCACCCCCCCCACGGGAGACTA5679100.15071734687024274No Hit
GTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTTCTAAACCCTCACCC5296920.1405746912334571No Hit
GCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGTCCCACAGAAGCTACAGC4995750.13258195587804672No Hit
AGTGGAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCT4751810.12610804459007383No Hit
GTGGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTTCTAAACCCTCACCCCCCCCACGGGAGACTAGAGCT4735510.12567545971676905No Hit
GGGAGCACCGTGGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTTCTAAACCCTCACCCCCCCCACGGGAG4643070.12322219924509481No Hit
CCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTACAGAATGT4620980.12263595385544439No Hit
GCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTTCTAAAC4546830.12066809076614707No Hit
GCCTGACGCCTGAGCAGTGGAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGTGGAG4540860.12050965323893055No Hit
GTTCTAAACCCTCACCCCCCCCACGGGAGACTAGAGCTGCAGGATCCCAGGGGAGGGGTCTCTCCTCCCACCCC4500270.11943243728755389No Hit
GCTATCTGAGCCTGACGCCTGAGCAGTGGAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGC4405850.11692662969630027No Hit
GAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTTCTAAACCCTCACCCCCCCCACGG4259010.11302965038365806No Hit
GGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTTCTAAACCCTCACCCCCCCCACGGGAGACTAGAGCTGC4233520.11235317256644715No Hit
AGACAGTGGCCCCTACAGAATGTTCATAGGTTCTAAACCCTCACCCCCCCCACGGGAGACTAGAGCTGCAGGAT4233460.1123515802294902No Hit
GGTTCTAAACCCTCACCCCCCCCACGGGAGACTAGAGCTGCAGGATCCCAGGGGAGGGGTCTCTCCTCCCACCC4140490.10988425411469624No Hit
CTCCAAACAAAGCAACAACAAGTACGCGGCCAGCAGCTATCTGAGCCTGACGCCTGAGCAGTGGAAGTCCCACA4139220.10985054964910744No Hit
CACGCATGAAGGGAGCACCGTGGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTTCTAAACCCTCACCCCC4108500.10903527312714908No Hit
CTGAGCCTGACGCCTGAGCAGTGGAAGTCCCACAGAAGCTACAGCTGCCAGGTCACGCATGAAGGGAGCACCGT3948070.10477762949375768No Hit
ATAGGTTCTAAACCCTCACCCCCCCCACGGGAGACTAGAGCTGCAGGATCCCAGGGGAGGGGTCTCTCCTCCCA3858920.10241168216522285No Hit
GGAGCACCGTGGAGAAGACAGTGGCCCCTACAGAATGTTCATAGGTTCTAAACCCTCACCCCCCCCACGGGAGA3839720.10190213433899888No Hit
GGCCCCTACAGAATGTTCATAGGTTCTAAACCCTCACCCCCCCCACGGGAGACTAGAGCTGCAGGATCCCAGGG3832150.10170123449293035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)