EGAF00004977910 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004977910
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10352992
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	24212	0.23386476102753678	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG	23784	0.22973069041297436	No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAA	16203	0.15650548170036255	No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCG	14913	0.14404531559572345	No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG	14529	0.14033624289480762	No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGCCG	11542	0.11148467998429824	No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCG	11086	0.1070801561519607	No Hit
GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAA	11059	0.10681936197767758	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	5155	44.817486	1
GTATCAA	13660	44.573032	1
ATCAACG	20035	30.611628	3
TCAACGC	20620	29.826078	4
CAACGCA	21050	29.283485	5
AACGCAG	22130	27.72941	6
TCTAGCG	2645	27.256025	28
CGCAATA	2705	27.034012	36
CTAGCGG	2750	26.215086	29
AAAGTCG	5230	26.183176	59
TATCAAC	23660	26.156588	2
AGTCGGA	5310	25.723495	61
ATTAATC	5500	25.274477	45
AGGTTCG	5360	25.032707	67
AATACGA	2910	25.01005	39
GAACGAA	5485	24.965546	54
ACGAAAG	5505	24.812428	56
AGAACGA	5600	24.452982	53
AAGTCGG	5835	23.704725	60
CAATACG	3055	23.597982	38