EGAF00004977931 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004977931
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11080370
Sequences flagged as poor quality	0
Sequence length	75
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21201	0.19133837588455982	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG	13081	0.11805562449629389	No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG	12995	0.11727947712937382	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	12470	0.11254136820340838	No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGT	12160	0.10974362769474305	No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGACAATGGTCTGGACACTTCACTGGGTG	11155	0.10067353346503773	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	8625	47.849007	1
GTATCAA	25855	47.044483	1
TATCAAC	37840	32.304703	2
ATCAACG	37960	32.1107	3
TCAACGC	38580	31.61183	4
CAACGCA	39270	31.042982	5
AACGCAG	41180	29.636118	6
ACGCAGA	48565	25.122538	7
CGCAGAG	50220	24.300941	8
TCGTATG	1890	24.274496	40
AGAGTAC	50995	23.87796	11
GAGTACT	19575	23.430254	12
CAGAGTA	52560	23.232487	10
GCAGAGT	52800	23.126781	9
CTCGTAT	2060	21.607885	39
AGTACAT	35630	21.292953	13
GTACTTT	21560	21.273636	14
GAGTACA	37220	20.4759	12
ATCTCGT	2050	20.36673	37
TACTTTT	22830	20.241453	15