EGAF00004977957 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004977957
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11581726
Sequences flagged as poor quality	0
Sequence length	75
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	29668	0.2561621644304139	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG	28229	0.24373741875779137	No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAA	21830	0.18848658654159145	No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCG	17219	0.14867386778101987	No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG	15086	0.13025692370895323	No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGACAATGGTCTGGACACTTCACTGGGTG	15072	0.1301360436259673	No Hit
GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAA	13639	0.11776310370319588	No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGCCG	12835	0.11082113322314825	No Hit
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATT	12388	0.10696160485924118	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	6380	44.01476	1
GTATCAA	15230	43.911484	1
ATCAACG	22620	29.459389	3
TCAACGC	22700	29.309227	4
CGCAATA	2550	29.229137	36
CAACGCA	23060	28.878464	5
CTAGCGG	2630	28.587627	29
TCTAGCG	2620	28.563498	28
AATACGA	2710	27.5045	39
TATCAAC	24805	27.032543	2
AACGCAG	24770	26.87045	6
CAATACG	2820	26.431631	38
ATACGAA	3005	24.796144	40
ATTAATC	5415	24.781942	45
GCGCAAT	3035	24.558466	35
GCAATAC	3040	24.518816	37
CTAGGAC	5845	23.54494	3
ACGAAAG	5590	23.443926	56
AAAGTCG	5825	23.149784	59
GAACGAA	5790	22.634123	54