EGAF00004977958 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004977958
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11581726
Sequences flagged as poor quality	0
Sequence length	75
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	26181	0.22605438947528203	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG	25662	0.2215731921131617	No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAA	17546	0.1514972811479049	No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCG	14528	0.12543898897280076	No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGACAATGGTCTGGACACTTCACTGGGTG	13865	0.11971445361425403	No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG	13644	0.11780627516140513	No Hit
GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAA	12040	0.1039568713678773	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	5785	44.86385	1
GTATCAA	14200	43.294765	1
ATTAATC	5585	29.152308	45
ATCAACG	21515	28.843231	3
TCAACGC	21700	28.643908	4
CAACGCA	22030	28.262543	5
ACGAAAG	5655	27.875263	56
AAAGTCG	5720	27.739647	59
AGGTTCG	5675	27.472998	67
AACGAAA	5770	27.319923	55
GAACGAA	5810	27.191206	54
AACGCAG	23460	26.569098	6
AGTCGGA	6045	26.30533	61
TATCAAC	24000	26.001719	2
CGCAATA	2430	25.55096	36
AGAACGA	6325	25.086073	53
AAGTCGG	6400	24.899994	60
CATTAAT	6595	24.896849	44
TCTAGCG	2555	24.841042	28
CTAGCGG	2585	24.685762	29