EGAF00004978022 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004978022
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	38121132
Sequences flagged as poor quality	0
Sequence length	75
%GC	52

$Per base quality graph$

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG	48461	0.1271237171026296	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	47459	0.12449525370862545	No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAA	44890	0.1177562093381697	No Hit
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCCCCCGGCCGTCCCTCTTAATCATGGC	40696	0.10675443740757751	No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCT	40427	0.10604879204531492	No Hit
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATG	39359	0.10324719633194523	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	35815	41.75405	1
GGTATCA	14945	34.875965	1
ATCAACG	49485	30.21241	3
CAACGCA	50005	30.17544	5
TCAACGC	49680	30.086876	4
AACGCAG	54010	27.975945	6
GTACATG	120585	23.87303	1
TACATGG	119165	23.249725	2
ACGCAGA	65885	22.959187	7
TCTAGCG	16435	22.141567	28
ACATGGG	124925	22.063147	3
CTAGCGG	16635	22.0415	29
AAAGTCG	18445	21.93606	59
CGCAGAG	69375	21.645586	8
AGAGTAC	70095	21.369534	11
TATCAAC	71915	20.985495	2
AGTCGGA	19525	20.669504	61
CAGAGTA	73765	20.409231	10
GAACGAA	20170	20.249968	54
ACGAAAG	20365	19.9703	56