EGAF00004978041 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004978041
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10929457
Sequences flagged as poor quality	0
Sequence length	75
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	21061	0.1926994177295359	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG	19409	0.17758430267853198	No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCTTCCG	16417	0.1502087432156968	No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG	15429	0.14116895285831677	No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGACAATGGTCTGGACACTTCACTGGGTG	13482	0.12335471011963359	No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGCCG	12278	0.11233860931974937	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	15695	46.062485	1
GGTATCA	5965	45.075375	1
ATCAACG	23490	31.02706	3
TCAACGC	24130	30.189144	4
CAACGCA	24660	29.523218	5
TATCAAC	25055	29.159063	2
AACGCAG	26495	27.543196	6
ATTAATC	2600	26.003317	45
TATCGTC	2025	25.546581	63
TATATCG	2270	24.30964	60
CGCAATA	1620	24.067924	36
ATACCGT	4675	22.57368	6
TTATATC	2450	22.523628	59
TTTATAT	2500	22.487127	58
CTAGCGG	1735	22.4637	29
CTAGGAC	5020	22.399485	3
ACCGTCG	4600	22.116926	8
ACGCAGA	33120	22.064962	7
TACCGGT	2665	21.999575	7
TAACCGC	805	21.849365	53