EGAF00004978168 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004978168
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	28989240
Sequences flagged as poor quality	0
Sequence length	75
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG	39577	0.13652306855923094	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	38264	0.13199380183819928	No Hit
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCCCCCGGCCGTCCCTCTTAATCATGGC	33911	0.116977885587894	No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAA	33560	0.11576709151395483	No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGT	31960	0.11024780228802133	No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCG	31464	0.10853682262798198	No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCT	31210	0.10766063546336503	No Hit
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATG	30861	0.1064567405009583	No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGG	30777	0.10616697781659677	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	32315	41.95629	1
GGTATCA	12305	38.18967	1
ATCAACG	44440	30.63793	3
TCAACGC	44665	30.506762	4
CAACGCA	45355	30.370802	5
AACGCAG	48420	28.490822	6
ACGCAGA	57100	24.201439	7
CGCAGAG	59435	23.106344	8
GTACATG	98065	22.16372	1
AGAGTAC	62240	22.01003	11
TAACGGC	4540	21.88258	36
GCAGAGT	63070	21.691946	9
TACATGG	97110	21.681122	2
CAGAGTA	64870	21.229362	10
TATCAAC	65145	21.14726	2
TCTAGCG	13735	20.919172	28
ACATGGG	101055	20.80911	3
CTAGCGG	14035	20.545893	29
AGTACAT	66295	20.38797	13
AAAGTCG	13620	19.829992	59